BtaEX6008941 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21796074-21810836:+
Coord C1 exon
chr2:21796074-21796188
Coord A exon
chr2:21799169-21799255
Coord C2 exon
chr2:21810687-21810836
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTCAATATCTTCTGATAGCTT
3' ss Score
6.74
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TCCTGTACCAGGCCCATTTCCTCTTCTCTTACATCTTCCTAATGGACAAACCATGCCTGTTGCTATTCCTGCATCAATCACAAGTTCTAATGTGCATGTTCCAGCTGCAGTTCCA
Seq A exon
CTTGTTCGACCAGTCACCATGGTGCCTAGCGTTCCAGGAATTCCAGGTCCTTCCTCTCCTCAACCAGTGCAGTCAGAAGCAAAAATG
Seq C2 exon
AGATTAAAAGCTGCTTTGACCCAGCAACATCCTCCAGTTACCAACGGCGATACTGTCAAAGGTCACAGTAGTGGTTTGGTTAGGACTCAATCAGAGGAATCTCGACCACAGTCATTACAACAGCCAGCCACATCCACCACAGAAACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295-'15-22,'15-20,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000002963fB822
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTTCCAGCTGCAGTTCCA
R:
TGTTTCTGTGGTGGATGTGGC
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]