RnoEX0012520 @ rn6
Exon Skipping
Gene
ENSRNOG00000001597 | Atf2
Description
activating transcription factor 2 [Source:RGD Symbol;Acc:621862]
Coordinates
chr3:60733299-60747741:-
Coord C1 exon
chr3:60747627-60747741
Coord A exon
chr3:60744743-60744829
Coord C2 exon
chr3:60733299-60733448
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTAAATATCTTTTTCACAGCTT
3' ss Score
7.45
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
TCCTGTACCAGGCCCATTTCCTCTTCTATTACATCTTCCTAATGGACAAACCATGCCCGTTGCTATTCCTGCATCAATTACAAGTTCTAATGTGCATGTTCCAGCTGCAGTCCCA
Seq A exon
CTTGTTCGGCCAGTCACCATGGTGCCTAGTGTTCCAGGAATCCCAGGCCCTTCCTCTCCTCAACCGGTCCAGTCAGAAGCAAAAATG
Seq C2 exon
AGATTAAAAGCTGCTTTGACCCAGCAACACCCTCCAGTTACCAATGGTGATACTGTAAAAGGCCACGGCAGTGGATTGGTTAGGGCCCAGTCAGAAGAGTCTCGTCCACAGTCCTTGCAGCAGCCAGCCACGTCCACTACAGAGACTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001597-'24-26,'24-23,26-26
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=0.937 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCATGCCCGTTGCTAT
R:
TCTTCTGACTGGGCCCTAACC
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]