GgaEX0013637 @ galGal4
Exon Skipping
Gene
ENSGALG00000009287 | ATF2
Description
Cyclic AMP-dependent transcription factor ATF-2 [Source:UniProtKB/Swiss-Prot;Acc:O93602]
Coordinates
chr7:16179665-16189332:+
Coord C1 exon
chr7:16179665-16179779
Coord A exon
chr7:16179945-16180031
Coord C2 exon
chr7:16189183-16189332
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTATACTTTATCTGGTCAGCTT
3' ss Score
5.15
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCCAGTTCCAGGCCCGTTTCCTCTGCTGTTACATCTTCCTAATGGACAAACCATGCCTGTTGCTATTCCTGCATCTATTACAAATTCCAACGTGCATGTCCCTGCTGCAGTTCCA
Seq A exon
CTTGTTAGACCTGTCACCATGGTGCCTAGTATCCCAGGAATCCCAGGGCCTTCCTCCCCACAGCCAGTGCAGTCTGAGGCTAAATTG
Seq C2 exon
AGACTGAAAGCAGCCTTGACCCAGCAGCACCCTCAGGTAACAAATGGAGATACTGCCAAGGGACATCCGAGTGGGTTGGTTAGGACTCAGTCAGAAGAGCCGCGACCACAATCACTACAGCAACCTGCAACTTCAACAACTGAAACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.971 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGTTTCCTCTGCTGTTAC
R:
TCGGATGTCCCTTGGCAGTAT
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]