GgaEX0013637 @ galGal3
Exon Skipping
Gene
ENSGALG00000009287 | ATF2_CHICK
Description
NA
Coordinates
chr7:17811128-17813259:+
Coord C1 exon
chr7:17811128-17811242
Coord A exon
chr7:17811408-17811494
Coord C2 exon
chr7:17813159-17813259
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTATACTTTATCTGGTCAGCTT
3' ss Score
5.15
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCCAGTTCCAGGCCCGTTTCCTCTGCTGTTACATCTTCCTAATGGACAAACCATGCCTGTTGCTATTCCTGCATCTATTACAAATTCCAACGTGCATGTCCCTGCTGCAGTTCCA
Seq A exon
CTTGTTAGACCTGTCACCATGGTGCCTAGTATCCCAGGAATCCCAGGGCCTTCCTCCCCACAGCCAGTGCAGTCTGAGGCTAAATTG
Seq C2 exon
GAAATTAGGTTCTTAAGGAGATTACTCTTGAGTGATCTGTCCTTATGAAGCTTTAAAGCAGGGAAGAAAATACATGTATGTAGTGAAGATTTTGATCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287-'12-13,'12-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTTCCAGGCCCGTTTC
R:
AGCTTCATAAGGACAGATCACTCA
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]