BtaEX6009058 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24750959-24755446:+
Coord C1 exon
chr2:24750959-24751040
Coord A exon
chr2:24752305-24752463
Coord C2 exon
chr2:24755394-24755446
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTGTTTTATTTGTAGCTG
3' ss Score
7.65
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CAATCTCATGGTTTAGGCAGGCCTATCTGGCTCCAGATTGCCGAGTCTGCTTACAGATTCACTCTGGGCTCAGTTGCTGGAG
Seq A exon
CTGTGGGGGCCACCGCAGTATATCCTATAGATCTGGTGAAGACCCGCATGCAAAACCAGCGTGGCACCGGCTCTGTTGTGGGAGAGCTGATGTACAAAAACAGCTTTGACTGTTTTAAGAAAGTCTTGCGTTATGAGGGCTTCTTTGGACTCTACCGGG
Seq C2 exon
GTCTGATACCGCAACTTATAGGGGTTGCTCCAGAGAAGGCCATTAAACTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762-'17-23,'17-22,18-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=50.0)
A:
PF0015322=Mito_carr=FE(54.1=100)
C2:
PF0015322=Mito_carr=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTCATGGTTTAGGCAGGCC
R:
AGTTTAATGGCCTTCTCTGGAGC
Band lengths:
130-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]