DreEX6019982 @ danRer10
Exon Skipping
Gene
ENSDARG00000102362 | slc25a12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
Coordinates
chr6:3806619-3809186:-
Coord C1 exon
chr6:3809102-3809186
Coord A exon
chr6:3808861-3809019
Coord C2 exon
chr6:3806619-3806671
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCTGTAGTGTTTGTGTGCAGCCA
3' ss Score
5.43
5' ss Seq
GAGGTTGGA
5' ss Score
2.95
Exon sequences
Seq C1 exon
CATTCGCATGGGGAGGTTTCTCGGCCTGTGTGGCTGCAGGCTGCAGAGTCGGCCTACAGGTTCACTCTGGGCTCCATCGCTGGAG
Seq A exon
CCACCGGTGCTACAGCCGTGTACCCTATAGACCTGGTGAAAACCCGCATGCAGAACCAGCGCTCCACCGGCTCCTTCGTAGGAGAGCTCATGTACAAGAACAGCTTCGACTGCGCCAAGAAAGTCCTGCGATACGAGGGATTCTTTGGCTTTTATAGAG
Seq C2 exon
GTCTTCTTCCGCAGCTCATTGGAGTGGCTCCAGAAAAAGCCATCAAGCTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102362-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(15.2=51.7)
A:
PF0015322=Mito_carr=FE(53.5=100)
C2:
PF0015322=Mito_carr=FE(17.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCGCATGGGGAGGTTTCT
R:
AGTGAGCTTGATGGCTTTTTCTG
Band lengths:
138-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]