MmuEX6102101 @ mm10
Exon Skipping
Gene
ENSMUSG00000027010 | Slc25a12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Coordinates
chr2:71293672-71298651:-
Coord C1 exon
chr2:71298570-71298651
Coord A exon
chr2:71296665-71296823
Coord C2 exon
chr2:71293672-71293724
Length
159 bp
Sequences
Splice sites
3' ss Seq
AAAAATTGTTCTATTTGTAGCTG
3' ss Score
6.28
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CAATCTCCTGGCTTGGGCAGACCTATCTGGCTCCAGATTGCCGAGTCTGCATACAGGTTCACTCTGGGCTCAGTTGCTGGAG
Seq A exon
CTGTGGGGGCCACTGCGGTGTACCCCATAGACCTGGTGAAGACCCGGATGCAAAACCAGCGTGGTACGGGCTCTGTGGTCGGGGAGCTGATGTATAAAAACAGCTTCGACTGTTTTAAGAAAGTGTTGCGCTACGAGGGTTTCTTTGGACTGTACCGAG
Seq C2 exon
GTCTGATCCCACAGCTGATAGGGGTTGCACCAGAAAAAGCCATTAAGCTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027010-'37-25,'37-22,38-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=50.0)
A:
PF0015322=Mito_carr=FE(54.1=100)
C2:
PF0015322=Mito_carr=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCTCCTGGCTTGGGCA
R:
GCTTAATGGCTTTTTCTGGTGCA
Band lengths:
130-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types