DmeEX6024373 @ dm6
Exon Skipping
Gene
FBgn0028646 | aralar1
Description
The gene aralar1 is referred to in FlyBase by the symbol Dmelaralar1 (CG2139, FBgn0028646). It is a protein_coding_gene from Dmel. It has 7 annotated transcripts and 7 polypeptides (5 unique). Gene sequence location is 3R:30445635..30455867. Its molecular function is described by: L-aspartate transmembrane transporter activity; L-glutamate transmembrane transporter activity; transmembrane transporter activity; identical protein binding; calcium ion binding. It is involved in the biological process described with 6 unique terms, many of which group under: transport; ion transmembrane transport; dicarboxylic acid transport; amino acid transport; localization. 17 alleles are reported. No phenotypic data is available. No phenotypic class data is available. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages.
Coordinates
chr3R:30446564-30447578:-
Coord C1 exon
chr3R:30447412-30447578
Coord A exon
chr3R:30447230-30447348
Coord C2 exon
chr3R:30446564-30447173
Length
119 bp
Sequences
Splice sites
3' ss Seq
TATATATTATGTACCATTAGCTG
3' ss Score
3.46
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CCGCATCGACTATAGTGACCTGAGCAACATCGCACCCGAGCATTACACCAAGCATATGACACATCGTCTGGCGGAGATCAAGGCGGTGGAGAGTCCTGCGGACCGATCTGCCTTTATTCAGGTCCTGGAGAGCTCTTACCGTTTCACTCTCGGTTCCTTTGCCGGCG
Seq A exon
CTGTGGGCGCCACTGTGGTCTACCCCATCGATCTAGTCAAGACTCGAATGCAGAACCAGCGAGCGGGTTCCTATATTGGTGAAGTTGCCTATCGAAACTCATGGGACTGCTTCAAAAAG
Seq C2 exon
GTGGTTCGCCACGAGGGATTCATGGGTCTCTACAGAGGTCTCCTGCCCCAGCTAATGGGCGTGGCCCCCGAGAAAGCCATCAAACTGACGGTGAATGATTTGGTGAGGGACAAACTCACCGACAAGAAGGGCAACATTCCCACATGGGCGGAAGTTCTGGCTGGTGGATGTGCCGGTGCGTCGCAGGTGGTGTTCACCAATCCCCTGGAGATTGTGAAGATCCGTCTCCAGGTGGCGGGAGAAATCGCTAGTGGGAGCAAGATCCGCGCGTGGTCGGTGGTCCGGGAACTGGGACTCTTTGGCCTCTACAAGGGAGCCAGAGCATGTCTCCTCCGCGATGTGCCATTCTCGGCCATCTACTTCCCGACCTACGCCCACACCAAGGCCATGATGGCCGACAAGGACGGCTACAATCATCCACTCACCCTGCTGGCCGCCGGTGCCATCGCCGGTGTTCCGGCCGCCTCCCTTGTCACGCCCGCCGACGTCATCAAGACCCG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0028646-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(15.3=26.3)
A:
PF0015322=Mito_carr=FE(39.8=100)
C2:
PF0015322=Mito_carr=PD(42.9=20.6),PF0015322=Mito_carr=WD(100=45.1),PF0015322=Mito_carr=PU(70.5=32.8)
Main Inclusion Isoform:
FBpp0297541
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0085054, FBpp0085055, FBpp0085056, FBpp0085057, FBpp0303322
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGGAGAGCTCTTACCGT
R:
TCTCCAGGGGATTGGTGAACA
Band lengths:
257-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)