GgaEX1053036 @ galGal3
Exon Skipping
Gene
ENSGALG00000009728 | F1NWI3_CHICK
Description
NA
Coordinates
chr2:24120073-24126590:-
Coord C1 exon
chr2:24126506-24126590
Coord A exon
chr2:24125898-24126056
Coord C2 exon
chr2:24120073-24120125
Length
159 bp
Sequences
Splice sites
3' ss Seq
AGCTTGATCTGTATTTGCAGCTG
3' ss Score
7.02
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AAAGCTCCAGGTGATGTGTCTCGACCAGTCCTCATCCAGATTGCAGAATCAGCGTACAGGTTCGCCCTTGGTTCAGTTGCTGGAG
Seq A exon
CTGTTGGAGCCACTGCAGTCTACCCAATTGATTTGGTAAAAACTCGTATGCAAAACCAGCGCTCTACAGGCTCTTTTGTGGGAGAACTTATGTATAAAAACAGCTTTGATTGCTTCAAGAAAGTGCTTCGTTATGAAGGTTTCTTTGGGCTTTATAGAG
Seq C2 exon
GTCTGTTACCACAGCTATTAGGAGTAGCACCAGAGAAGGCCATAAAACTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728-'17-21,'17-19,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=48.3)
A:
PF0015322=Mito_carr=FE(54.1=100)
C2:
PF0015322=Mito_carr=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTCCAGGTGATGTGTCT
R:
AGTAAGTTTTATGGCCTTCTCTGGT
Band lengths:
138-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]