BtaEX6026334 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003773 | SLC25A13
Description
solute carrier family 25 (aspartate/glutamate carrier), member 13 [Source:HGNC Symbol;Acc:HGNC:10983]
Coordinates
chr4:13414991-13430723:-
Coord C1 exon
chr4:13430636-13430723
Coord A exon
chr4:13430003-13430161
Coord C2 exon
chr4:13414991-13415043
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTGGTATTATTTGATTGTAGCTG
3' ss Score
4.48
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
AAGAAGGCATCAGTTGATTCATCTCGACCAATTCTCCTGCAGATTGCAGAGTCAGCCTACAGGTTTGGTCTCGGTTCTATTGCTGGAG
Seq A exon
CTGTTGGAGCCACTGCGGTGTATCCTATCGATCTGGTAAAAACTCGAATGCAGAACCAACGATCAACCGGCTCTTTCGTAGGAGAGCTTATGTATAAAAACAGCTTTGACTGTTTTAAGAAAGTGCTGCGCTATGAAGGCTTCTTTGGACTGTATAGAG
Seq C2 exon
GTCTGTTGCCACAGTTACTGGGAGTCGCCCCAGAGAAGGCCATAAAACTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003773-'12-20,'12-19,13-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=46.7)
A:
PF0015322=Mito_carr=FE(54.1=100)
C2:
PF0015322=Mito_carr=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCATCAGTTGATTCATCTCGA
R:
TGTAAGTTTTATGGCCTTCTCTGGG
Band lengths:
138-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]