DreEX0072235 @ danRer10
Exon Skipping
Gene
ENSDARG00000099353 | slc25a13
Description
solute carrier family 25 (aspartate/glutamate carrier), member 13 [Source:ZFIN;Acc:ZDB-GENE-080319-2]
Coordinates
chr19:41734485-41740034:-
Coord C1 exon
chr19:41739927-41740034
Coord A exon
chr19:41736772-41736930
Coord C2 exon
chr19:41734485-41734537
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCCCTCATATATCAGCTG
3' ss Score
7.06
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATGTGTTTTCCTCCATTTTGCAGCATTCTGGTGGAGAAGCATCTCGCTCAGTTCTGATCCAGGCAGCGGAGTCGGCCTACAGGTTCACCCTGGGCTCCGTGGCTGGAG
Seq A exon
CTGTAGGTGCGACGGCCGTGTACCCCATCGACCTGGTGAAGACCCGCATGCAGAACCAGCGCTCTTCAGGGTCCTTAGTGGAAGAGCTCATGTACAAGAACAGCCTGGACTGCTTTAAGAAGGTCGTGCGCTACGAGGGCTTCTTCGGCCTCTACAGAG
Seq C2 exon
GCCTGGTACCGCAGCTTCTGGGCGTGGCTCCCGAGAAAGCCATAAAGCTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099353-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(15.2=40.5)
A:
PF0015322=Mito_carr=FE(53.5=100)
C2:
PF0015322=Mito_carr=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTTTCCTCCATTTTGCAGC
R:
CTTTATGGCTTTCTCGGGAGCC
Band lengths:
154-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]