HsaEX6009114 @ hg19
Exon Skipping
Gene
ENSG00000004864 | SLC25A13
Description
solute carrier family 25, member 13 (citrin) [Source:HGNC Symbol;Acc:10983]
Coordinates
chr7:95800784-95814323:-
Coord C1 exon
chr7:95814239-95814323
Coord A exon
chr7:95813589-95813747
Coord C2 exon
chr7:95800784-95800836
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATGATATTGTTTAATTTTAGCTG
3' ss Score
7.34
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
AAGGCCTCAGGTGATTCAGCTCGACCAGTTCTTCTACAAGTTGCAGAGTCGGCCTACAGGTTTGGTCTGGGTTCTGTTGCTGGAG
Seq A exon
CTGTTGGAGCCACTGCTGTGTATCCTATCGATCTTGTAAAAACTCGAATGCAGAACCAACGATCAACTGGCTCTTTTGTGGGAGAACTCATGTATAAAAACAGCTTTGACTGTTTTAAGAAAGTGCTACGCTATGAAGGCTTCTTTGGACTGTATAGAG
Seq C2 exon
GTCTGTTGCCACAGTTATTGGGAGTTGCCCCAGAGAAGGCCATAAAACTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000004864-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=48.3)
A:
PF0015322=Mito_carr=FE(54.1=100)
C2:
PF0015322=Mito_carr=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCTCAGGTGATTCAGCT
R:
TGTAAGTTTTATGGCCTTCTCTGGG
Band lengths:
138-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)