HsaEX6009114 @ hg38
Exon Skipping
Gene
ENSG00000004864 | SLC25A13
Description
solute carrier family 25 member 13 [Source:HGNC Symbol;Acc:HGNC:10983]
Coordinates
chr7:96171472-96185011:-
Coord C1 exon
chr7:96184927-96185011
Coord A exon
chr7:96184277-96184435
Coord C2 exon
chr7:96171472-96171524
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATGATATTGTTTAATTTTAGCTG
3' ss Score
7.34
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
AAGGCCTCAGGTGATTCAGCTCGACCAGTTCTTCTACAAGTTGCAGAGTCGGCCTACAGGTTTGGTCTGGGTTCTGTTGCTGGAG
Seq A exon
CTGTTGGAGCCACTGCTGTGTATCCTATCGATCTTGTAAAAACTCGAATGCAGAACCAACGATCAACTGGCTCTTTTGTGGGAGAACTCATGTATAAAAACAGCTTTGACTGTTTTAAGAAAGTGCTACGCTATGAAGGCTTCTTTGGACTGTATAGAG
Seq C2 exon
GTCTGTTGCCACAGTTATTGGGAGTTGCCCCAGAGAAGGCCATAAAACTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000004864-'32-34,'32-31,33-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=48.3)
A:
PF0015322=Mito_carr=FE(54.1=100)
C2:
PF0015322=Mito_carr=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCTCAGGTGATTCAGCT
R:
TGTAAGTTTTATGGCCTTCTCTGGG
Band lengths:
138-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains