RnoEX6012655 @ rn6
Exon Skipping
Gene
ENSRNOG00000009957 | Slc25a13
Description
solute carrier family 25 member 13 [Source:RGD Symbol;Acc:1565889]
Coordinates
chr4:31632765-31646770:-
Coord C1 exon
chr4:31646683-31646770
Coord A exon
chr4:31646100-31646258
Coord C2 exon
chr4:31632765-31632817
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTCCCTTCATTCCAGCGG
3' ss Score
8.78
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
CAGAAGGCCTCGGGTGATGCTGCTCGGCCCTTTCTTCTACAGCTGGCAGAGTCGGCCTACAGGTTTGGACTGGGTTCTATTGCTGGAG
Seq A exon
CGGTCGGAGCTACTGCCGTGTATCCCATCGATCTTGTGAAGACTCGAATGCAGAACCAGCGATCAACCGGCTCTTTTGTGGGAGAGCTCATGTACAAAAACAGCTTTGACTGTTTTAAGAAAGTGCTCCGCTACGAGGGCTTCTTTGGACTGTACAGAG
Seq C2 exon
GTTTGCTGCCACAGTTGCTGGGAGTCGCCCCGGAGAAGGCCATAAAACTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009957-'24-18,'24-16,25-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=46.7)
A:
PF0015322=Mito_carr=FE(54.1=100)
C2:
PF0015322=Mito_carr=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGCCTCGGGTGATG
R:
AAGTTTTATGGCCTTCTCCGGG
Band lengths:
138-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]