BtaEX6009059 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24738893-24752463:+
Coord C1 exon
chr2:24738893-24738977
Coord A exon
chr2:24750959-24751040
Coord C2 exon
chr2:24752305-24752463
Length
82 bp
Sequences
Splice sites
3' ss Seq
TATTTTCTTCTCCCCCACAGCAA
3' ss Score
9.85
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCGCTTGACTTTGGCAGATATTGAGAGAATAGCCCCACTGGCTGAAGGAGCCTTACCTTACAACCTGGCAGAACTTCAGAGACAG
Seq A exon
CAATCTCATGGTTTAGGCAGGCCTATCTGGCTCCAGATTGCCGAGTCTGCTTACAGATTCACTCTGGGCTCAGTTGCTGGAG
Seq C2 exon
CTGTGGGGGCCACCGCAGTATATCCTATAGATCTGGTGAAGACCCGCATGCAAAACCAGCGTGGCACCGGCTCTGTTGTGGGAGAGCTGATGTACAAAAACAGCTTTGACTGTTTTAAGAAAGTCTTGCGTTATGAGGGCTTCTTTGGACTCTACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762-'16-22,'16-21,17-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015322=Mito_carr=PU(14.3=50.0)
C2:
PF0015322=Mito_carr=FE(54.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGCAGAACTTCAGAGACA
R:
CGGTAGAGTCCAAAGAAGCCC
Band lengths:
180-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]