DreEX0072228 @ danRer10
Exon Skipping
Gene
ENSDARG00000102362 | slc25a12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
Coordinates
chr6:3808861-3811522:-
Coord C1 exon
chr6:3811438-3811522
Coord A exon
chr6:3809102-3809186
Coord C2 exon
chr6:3808861-3809019
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTCTGTCATTGCAGCAT
3' ss Score
8.27
5' ss Seq
GAGGTGCTC
5' ss Score
2.13
Exon sequences
Seq C1 exon
ACGATTGAACATGACTGATATCGAGAGGATAGCTCCACTAGAGGAAGGATCCCTGCCATATAATGTAGCTGAGGCGCAGAGACAG
Seq A exon
CATTCGCATGGGGAGGTTTCTCGGCCTGTGTGGCTGCAGGCTGCAGAGTCGGCCTACAGGTTCACTCTGGGCTCCATCGCTGGAG
Seq C2 exon
CCACCGGTGCTACAGCCGTGTACCCTATAGACCTGGTGAAAACCCGCATGCAGAACCAGCGCTCCACCGGCTCCTTCGTAGGAGAGCTCATGTACAAGAACAGCTTCGACTGCGCCAAGAAAGTCCTGCGATACGAGGGATTCTTTGGCTTTTATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102362-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015322=Mito_carr=PU(15.2=51.7)
C2:
PF0015322=Mito_carr=FE(53.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCACTAGAGGAAGGATCC
R:
CGCAGTCGAAGCTGTTCTTGT
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]