RnoEX0081767 @ rn6
Exon Skipping
Gene
ENSRNOG00000022922 | Slc25a12
Description
solute carrier family 25 member 12 [Source:RGD Symbol;Acc:1305181]
Coordinates
chr3:57901095-57913988:-
Coord C1 exon
chr3:57913904-57913988
Coord A exon
chr3:57902947-57903028
Coord C2 exon
chr3:57901095-57901253
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTCTTCCCCCTCAGCAA
3' ss Score
8.94
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCGCTTGACTCTGGCAGACATCGAGAGAATAGCTCCGCTGGCTGAGGGGGCCTTACCTTACAACCTGGCAGAGCTTCAGAGGCAG
Seq A exon
CAATCCCCCGGCTTGGGCAGACCTATCTGGCTCCAGATTGCCGAGTCTGCATACAGGTTCACTCTGGGCTCAGTGGCAGGAG
Seq C2 exon
CTGTGGGGGCCACTGCGGTCTATCCCATAGACCTGGTGAAGACCCGGATGCAAAACCAGCGCGGCACAGGCTCTGTGGTCGGGGAGCTGATGTATAAAAACAGCTTTGACTGTTTTAAGAAAGTGTTACGTTATGAGGGTTTCTTTGGACTGTACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022922-'15-24,'15-23,16-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015322=Mito_carr=PU(14.3=50.0)
C2:
PF0015322=Mito_carr=FE(54.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGACTCTGGCAGACATCG
R:
ATACATCAGCTCCCCGACCAC
Band lengths:
178-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]