GgaEX1053025 @ galGal3
Exon Skipping
Gene
ENSGALG00000009545 | F1P3D8_CHICK
Description
NA
Coordinates
chr7:19361452-19365417:+
Coord C1 exon
chr7:19361452-19361536
Coord A exon
chr7:19364700-19364784
Coord C2 exon
chr7:19365259-19365417
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTCTTCCTCACACAGCAA
3' ss Score
8.62
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCGCTTAACTTTGGCAGATATTGAGAGAGTAGCACCTTTAGCTGAGGGTGCATTACCGTACAACTTGGCAGAACTCCAGAGGCAG
Seq A exon
CAATCGTTTGGAGAGTTAAGCAGGCCTATCTGGCTCCAGGTAGCTGAGTCAGCCTACAGGTTCACTTTGGGCTCAATTGCTGGAG
Seq C2 exon
CTGTTGGTGCTACGGCAGTATATCCCATAGACCTGGTGAAAACTCGTATGCAGAATCAGCGCTCCACTGGTTCAGTCGTAGGAGAGTTGATGTATAAAAACAGCTTCGACTGCTTTAAAAAGGTTTTGCGTTTTGAAGGCTTTTTTGGTCTTTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015322=Mito_carr=PU(15.2=51.7)
C2:
PF0015322=Mito_carr=FE(53.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTACAACTTGGCAGAACT
R:
AGCCTTCAAAACGCAAAACCT
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]