BtaEX6009066 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24678582-24699355:+
Coord C1 exon
chr2:24678582-24678658
Coord A exon
chr2:24679612-24679659
Coord C2 exon
chr2:24699213-24699355
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCCCCTTACAGACA
3' ss Score
12.47
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GCGCGCGCGCCCTGACAGCTCGGCCCTGCTCGCTCACTCGCTCGTCCCCGGCTTCCGAGCACAGCATGGCGGTCAAG
Seq A exon
ACAACCAAGCGAGGTGATCCTCAGGAGTTAAGAAACATATTCCTACAG
Seq C2 exon
TATGCCAGTACTGAGGTTGATGGAGAACATTACATGACCCCGGAAGACTTTGTCCAGCGCTATCTTGGACTGTATAATGATCCAAATAGCAATCCGAAGATTGTGCAGCTCTTGGCAGGAGTAGCCGATCAAACCAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762-'1-2,'1-0,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134991=EF-hand_7=PU(14.5=62.5)
C2:
PF134991=EF-hand_7=FE(68.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGAGCACAGCATGGC
R:
TGCCAAGAGCTGCACAATCTT
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]