GgaEX1053018 @ galGal4
Exon Skipping
Gene
ENSGALG00000009545 | SLC25A12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr7:17411743-17419174:+
Coord C1 exon
chr7:17411743-17412248
Coord A exon
chr7:17413243-17413299
Coord C2 exon
chr7:17419032-17419174
Length
57 bp
Sequences
Splice sites
3' ss Seq
CATTAACTTACTTTTATTAGCAG
3' ss Score
1.72
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
CGTTCGTGGCCGCACACAAACTCGGGCCCGGCCAAGGGGAAGGGCACCGTCCCTACCGCGGGCGACGCTCCCCTAACAGAGAATCGACGGCAACACCTCGCCCTGCTCCCCACCGCCTCGCTCAGCAGCTGCAGGAAGGCCGCGAATCGGTAGGCCCAGCCTAGGACTCACCCGCCATTTCCCAGCGGCGGCGACAGCCGAGTCACCCGGGCAAAACGAATCAAGCCGCGCGCCCACTCGGCGGAAATAAGTACACGCGCACACACTTCCGCTTCCGCCCGCCCAAAAGCGGCCGAGAACCAACAGCTGCGCTCGGCGAGGCTCGGGGTCTCACGCGCATGCTCAGCTGTATGCCAAAGATCGCGCTGTCCCGGCGGGAGCCTTTAAGAAGGGCGTTCGCGCCGCGGCTCATTTGCTTAGCTCCGCCCTCAGGGGGCAGCCGTGTAGCGCGGTTGCTTTGATGTGGTGGGCGCGCGTACAGCGTTGCTTCGGCCTTACAG
Seq A exon
CAGGTGCCTTCGACCAAAAGAGCAGATCCTGCCGAACTACGAAGTATCTTTTTGCAG
Seq C2 exon
TATGCCAGTGTTGAGAAAGATGGAGAGCATTACATGACCCCAGAAGATTTTGTGCAGAAATACCTAGGACTTTATACAGATCCACGTTACAATCCTAAAACAGTACAGCTGTTGGCTGGAGTGGCAGATCAAACTAAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.292 C2=0.047
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138331=EF-hand_8=PU(78.4=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGCTTAGCTCCGCCCTC
R:
TGGGGTCATGTAATGCTCTCCA
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]