DreEX6019979 @ danRer10
Exon Skipping
Gene
ENSDARG00000102362 | slc25a12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
Coordinates
chr6:3800499-3821963:-
Coord C1 exon
chr6:3821906-3821963
Coord A exon
chr6:3821110-3821163
Coord C2 exon
chr6:3800499-3818099
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCAATGTTGTTGTTTTACAGGTG
3' ss Score
10.04
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACGCGCCTGCGCAACCCCACGACCACACGTGACGTCAGACAGCAGCATGGCGGCCAAG
Seq A exon
GTGCAGTTAACCAAAAGGGCCGACCCTAATGATCTGAAGGTCATCTTTCAAAAG
Seq C2 exon
TATGCCAGTGTGGTGGATAAGGATGGAGAGCGGTACATGACACCCATTGACTTCGTGCAGAGGTATTTGGGCCTCCACACGCAGCTCCACTTCAACCCTAAAACTGTGCATCTGCTTGCCGGAGTGGCTGACACCACAAAAGATGGGTGAGACATCTCCTATCTCCCATCTGTTTTCTAGTTGTGTTTTTTTCTGGACTGAACCCTGAACCTTTAGCTCAGTTTATATGTTAAAGTTCATTCATTTCAAAAAGATTTTGCATAACTTTTTTTGTATAATAATTATAAGACGTACATTACATATTTACTCCAGTACATTTTGTTAACTAGAACTTGTCACAGCATTTATATTCTGCTTCTCTCTGATAATTCGAAGTGCTTATTTCATCCTCATTTTGGATGAAATTGTCTGCTTAATAAATATATGTAAAGTTGGCTTCTACAAGATTTTAGCATTTATTTGTTTAAAAATCTATTACTAATATCTATCTATCTATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102362-'1-4,'1-0,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
PF134991=EF-hand_7=PU(21.1=88.9)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACGTGACGTCAGACAG
R:
TTAGGGTTGAAGTGGAGCTGC
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]