MmuEX6102092 @ mm10
Exon Skipping
Gene
ENSMUSG00000027010 | Slc25a12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Coordinates
chr2:71343890-71367749:-
Coord C1 exon
chr2:71367513-71367749
Coord A exon
chr2:71366527-71366580
Coord C2 exon
chr2:71343890-71344032
Length
54 bp
Sequences
Splice sites
3' ss Seq
CATTCCCCCCCCCCCCTCAGGTG
3' ss Score
11.05
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTCTGGTGTCCCCCGCAAGAGGTGCGACTGCCCCGCCGGCCCGCTGATGGATCAACCAAGGCCACTCGGTGCGCACCACCGACGCGCTCTAGCTCATTTGCATATAGACGGGCGCGGCGCTGCGACAGGAGGGAGCGCGGGCGCGGCCCCGGGCCGTGGCGCGCGCGCGCCCTGACAGCTCGGCCCAGCTCGCTCACTCGCTCGTTCCCGGCTTCCGAGCACAGCATGGCGGTCAAG
Seq A exon
GTGCATACAACCAAACGAGGTGATCCTCATGAGCTGAGAAACATATTCCTCCAG
Seq C2 exon
TATGCCAGCACTGAGGTGGACGGGGAGCATTACATGACTCCAGAAGACTTCGTTCAACGCTATCTTGGCCTGTACAACGATCCAAACAGCAACCCAAAGATTGTGCAGCTCTTGGCAGGAGTAGCTGATCAAACCAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027010-'4-4,'4-0,5-4=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.083 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
PF134991=EF-hand_7=PU(14.5=55.6)
C2:
PF134991=EF-hand_7=FE(68.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTCACTCGCTCGTTC
R:
TGGGTTGCTGTTTGGATCGTT
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types