BtaEX6009083 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25048578-25055075:-
Coord C1 exon
chr2:25054933-25055075
Coord A exon
chr2:25051251-25051360
Coord C2 exon
chr2:25048578-25048668
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATATTTTGTCCCAACTTCAGGCA
3' ss Score
7.22
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ATACACCGCCACTGCTCTTTGAGGTGTCCTCGCTGGAGAATGCTTTTCAGATTGGAGGCCATCCTTGGCACTACATCATTACACCTAATAAGAAGAAACAGAAAGGAGTTTTCCATATTTGTGCCTTAAAGGACAATTCCTTG
Seq A exon
GCAAAAAATGGGATCCAAGAAATGGAATGTTGTTCTTTAGAATCTGATTGGATCTACTTCCACCCTGATGCTTCTGGCAGAATAATACATGTTGGCCCAAATCAGGTCAA
Seq C2 exon
AGTTTTAAAGCTAAGTGAAGTAGAAAATAATAGTGCCCAGCATCAGATCTCTGAAGATTTTGTCATTTTGGCCAACAGAGAGAGGAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683-'16-17,'16-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACACCGCCACTGCTCTTTG
R:
TTTGTTCCTCTCTCTGTTGGCC
Band lengths:
234-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]