MmuEX0013824 @ mm10
Exon Skipping
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:71081911-71086626:+
Coord C1 exon
chr2:71081911-71082053
Coord A exon
chr2:71084425-71084534
Coord C2 exon
chr2:71086539-71086626
Length
110 bp
Sequences
Splice sites
3' ss Seq
AATATTTTTTCCAACTTCAGGCA
3' ss Score
7.19
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
ACTCACCACCTCCACTCTTTGAAGTTTCATCTCTGGAGAACGCATTCCAGATTGGAGGCCATCCTTGGCACTACATCATCACGCCTAATAAGAAGAAACAGAAAGGAGTTTTTCATATTTGTGCCCTAAAAGATAATTCTTTG
Seq A exon
GCAAAAAATGGAATCCAAGAAATGGAGTGCTGTTCATTAGAATCTGACTGGATCTATTTCCACCCTGATGCTTCTGGAAGAATAATACATGTTGGCCCAAACCAAGTCAA
Seq C2 exon
AGTCTTGAAGCTAAGTGAGGTAGAAAATGATAGTTCTCAGCATCAGATCTCTGAAGATTTTGTCATTTGGGCTAAAAGAGAAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACCACCTCCACTCTTTGA
R:
TCTGTCTTCTCTTTTAGCCCAA
Band lengths:
231-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types