GgaEX7005975 @ galGal4
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr7:17524197-17526257:-
Coord C1 exon
chr7:17526115-17526257
Coord A exon
chr7:17524698-17524807
Coord C2 exon
chr7:17524197-17524284
Length
110 bp
Sequences
Splice sites
3' ss Seq
GCTTTCCCTTCCTGTTTCAGGCA
3' ss Score
11.85
5' ss Seq
AAAGTATGA
5' ss Score
3.87
Exon sequences
Seq C1 exon
ATACCCCACCTTTGCTATTTGAAGCATCTTCTCTGGAGAATGCATTTCAAATTGGAGGCTTTCCTTGGCATTATATCATCACACCTAACAAGAAAAAACATAGAGGAGTCTTCTATATTTGTTCTCTGAAAGACAATGCTTTG
Seq A exon
GCAAAAAATGGCATACAAGATATGAAATGCTGTTCGCTGGAACCTGATTGGATATATTTCCATCCAGATATGTCGGGCAGAATAATCCACGTGGGACCAAATTTGATAAA
Seq C2 exon
AGTCTTGAAACTTAAAGAAGTTGAAAATAATACAGACCAAATAGAAATTGCAGAAGACTTTATAATCACGGCTAACAGAGAAAACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558-'12-15,'12-14,14-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACCTTTGCTATTTGAAGC
R:
ACAGTTTTCTCTGTTAGCCGTGA
Band lengths:
228-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]