RnoEX6017367 @ rn6
Exon Skipping
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57665335-57669482:+
Coord C1 exon
chr3:57665335-57665477
Coord A exon
chr3:57667251-57667360
Coord C2 exon
chr3:57669395-57669482
Length
110 bp
Sequences
Splice sites
3' ss Seq
AATATTTTTTTCCACTTCAGGCA
3' ss Score
8.19
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
ACTCACCACCTCCACTCTTTGAAGTTTCATCCCTGGAGAATGCATTTCAGATTGGAGGCCATCCTTGGCACTACATCATCACGCCTAATAAGAAGAAACAAAAGGGAGTTTTCCATATTTGTGCCCTTAAAGATAATTCCCTG
Seq A exon
GCAAAAAATGGAATCCAGGAAATGGAATGTTGTTCACTAGAATCTGACTGGATCTATTTCCACCCTGATGCTTCTGGAAGAATAATACACGTTGGCCCAAATCAAGTCAA
Seq C2 exon
AGTCTTGAAGCTGAGTGAAGTAGAAAATAATAGTTCTCAGCATCAGATCTCTGAAGATTTTGTCATTTGGGCCAATAGAGAAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403-'14-12,'14-10,15-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACCACCTCCACTCTTTGA
R:
TCTGTCTTCTCTATTGGCCCA
Band lengths:
231-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]