BtaEX6009091 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006918 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr2:25488888-25493317:+
Coord C1 exon
chr2:25488888-25488999
Coord A exon
chr2:25490640-25490747
Coord C2 exon
chr2:25492947-25493317
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTATTCATTTCTTTTAAAGCCA
3' ss Score
7.14
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GTATTTACCTCCCGAATGTTTCGTAGTTGGAAAGGAACCGCCAAAGATTTCCAACAAGGTTGACGTGTGGTCAGTTGGAGTCATCTTCTTTCAATGTCTTTATGGTAGAAAG
Seq A exon
CCATTTGGTCACAATCAATCTCAGCAAGACATTCTTCAAGAAAATACGATATTAAAAGCCACTGATGTCCAATTCCCTGTAAAACCTGTCGTAAGCAGTGAAGCAAAG
Seq C2 exon
GCCTTTATAAGACGCTGTTTGGCATACCGAAAAGAAGATAGGTTTGATGTGCACCAACTGGCAAATGACCCCTACCTTCTCCCACACATGAGAAGATCCAATTCTTCAGGCAACTTACACATGGCTGGGCTGACAGCATCACCCACACCCCCTTCTTCAAGCATACTTACTTACTGACTTTCCTCCAAAATCGGCATGATGTCTTTGAATTGCTTCCAGATGCACACTTGAGTTTGAGAGCTTCTGAGTGTTTTTGTTGTTTTTTTTTACACAGGATATGGTTGAGAACTGTTTGTGAACTGAAGTTTTTCATAGAGTCGTTTGTATGAGAGTGGATCATGGACCCTGAATAAATGTACACTTCTGACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006918-'29-31,'29-28,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.3=100)
A:
PF0006920=Pkinase=FE(12.5=100)
C2:
PF0006920=Pkinase=PD(9.0=42.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGAAAGGAACCGCCAAA
R:
ATGCTTGAAGAAGGGGGTGTG
Band lengths:
252-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]