RnoEX0090857 @ rn6
Exon Skipping
Gene
ENSRNOG00000060572 | Tlk1
Description
tousled-like kinase 1 [Source:RGD Symbol;Acc:1310370]
Coordinates
chr3:57013025-57018450:-
Coord C1 exon
chr3:57018339-57018450
Coord A exon
chr3:57017131-57017238
Coord C2 exon
chr3:57013025-57014776
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTTTTTTTTTTTAAGCCC
3' ss Score
8.61
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTATTTACCTCCCGAGTGCTTTGTAGTTGGAAAAGAGCCACCGAAGATCTCCAACAAGGTTGACGTGTGGTCAGTTGGGGTCATCTTCTTCCAGTGCCTCTATGGTAGAAAA
Seq A exon
CCCTTTGGTCACAATCAATCTCAACAAGACATTCTACAGGAAAACACAATACTAAAAGCCACAGAAGTCCAGTTCCCTGTAAAACCAGTTGTAAGCAGTGAAGCCAAG
Seq C2 exon
GCCTTCATAAGACGCTGTTTGGCTTACCGAAAAGAAGATCGATTTGATGTGCACCAGCTGGCAAATGACCCATACCTTCTGCCACACATGAGAAGATCAAATTCTTCAGGCAACCTACATATGTCTGGGCTGACAGCAACTCCCACGCCTCCTTCTTCAAGCATAATTACTTACTGACTCCTCCAAGATGGGCATGATCTCTTCTCTTTGATTGGCTTCCAGATGCATACTTGAATTTGAGTGCATTTGAGTGTTTGTGATTTTTTTTTTTAACATGGGACATGGTTAAGAAGTGTTTGTGAACTAAAGCTCTCCATGGAGTCCTTTGTGTGAGAGTGGATCATGGACAGTGACTAAGTACACACTCCTCACTGCCCTGGAGCAGCACAAAACAGGAACACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTTTATAATGCTTAAATATATTTGATTGTTACCAGAGAGTTCTAATAAGAAGGGTAGTTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060572_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.190
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.3=100)
A:
PF0006920=Pkinase=FE(12.5=100)
C2:
PF0006920=Pkinase=PD(9.0=42.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACAAGGTTGACGTGTGG
R:
ATGCCCATCTTGGAGGAGTCA
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]