MmuEX0047457 @ mm10
Exon Skipping
Gene
ENSMUSG00000041997 | Tlk1
Description
tousled-like kinase 1 [Source:MGI Symbol;Acc:MGI:2441683]
Coordinates
chr2:70712407-70717893:-
Coord C1 exon
chr2:70717782-70717893
Coord A exon
chr2:70716612-70716719
Coord C2 exon
chr2:70712407-70714165
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTATTATTCTTTTTTAAAAGCCA
3' ss Score
6.12
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTATTTACCTCCTGAGTGCTTTGTAGTTGGAAAAGAGCCACCGAAGATCTCCAACAAGGTTGACGTGTGGTCAGTTGGGGTCATCTTCTTCCAGTGCCTCTATGGTAGAAAA
Seq A exon
CCATTTGGTCACAATCAATCTCAACAAGACATTCTACAGGAAAACACAATACTGAAAGCCACAGAAGTCCAGTTCCCTGTAAAACCTGTTGTAAGCAGTGAAGCCAAG
Seq C2 exon
GCCTTCATAAGACGCTGTTTGGCTTACCGAAAAGAAGATCGATTTGATGTGCACCAGCTGGCAAATGACCCATACCTTCTGCCACACATGAGAAGATCAAATTCTTCAGGAAACTTACATATGTCTGGGCTGACAGCAACTCCCACACCTCCTTCTTCAAGCATAATTACTTACTGACTCCTCTAAGATTGGCATGACCTCTTCTCTTTGATTGGCTTCCAGATGCACACTTGAATTTGACTGCATTGGACTGTTTGTGGTATTTTTACATGGACATGGTTAAGAAGTGTTTGTGAACTAAGCTCTCCAAGGAGTCCTTGTGTGAGAGTGGATCATGGACAGTGACTAAGTACACACTCACTCCTCACTGCCCTGGAGCAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTTTATAATACTTAAATATATTTGATTGTTACCAGAGAGTTGTAATATGAAGGGTAGTTTTTCATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041997_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.190
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.3=100)
A:
PF0006920=Pkinase=FE(12.5=100)
C2:
PF0006920=Pkinase=PD(9.0=42.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCCACCGAAGATCTCCA
R:
GCTTGAAGAAGGAGGTGTGGG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types