GgaEX1058697 @ galGal4
Exon Skipping
Gene
ENSGALG00000009569 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr7:17650402-17655800:+
Coord C1 exon
chr7:17650402-17650513
Coord A exon
chr7:17650808-17650915
Coord C2 exon
chr7:17653659-17655800
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATCCTGTGCTTATTTTTCAGCCA
3' ss Score
7.89
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTACTTGCCTCCAGAGTGTTTTGTAGTTGGCAAAGAGCCACCAAAGATTTCTAATAAGGTTGATGTATGGTCAGTTGGAGTAATCTTTTTCCAGTGTCTTTATGGTAGAAAG
Seq A exon
CCATTTGGCCACAATCAATCACAGCAAGATATCTTACAAGAAAATACAATATTAAAAGCCACAGAAGTCCAGTTCCCTGTTAAGCCTGTTGTTAGCAATGAAGCCAAG
Seq C2 exon
GCCTTTATCAGACGCTGTTTAGCATACCGAAAAGAGGATAGATTTGATGTCCATCAACTGGCTAATGATCCTTACCTTCTCCCTCATATGAGGAGATCAAATTCTTCAGGAAACTTACATATGACTGGGCTAGCAGCATCCCCTACACCACCTACTTCAAGCATTATTTCATACTGAAATTTCTCCAGCTGAGGAATGGCATGATATCTTTGTGTAGTTTCCAGATGCAGACTTGAGCTTGAGAACATTTGGGTGTTTTTACGCAGGACAAGTTTGATAACTGTGTTTTCAGGCTGAAGTCCTCCTACATAGTGTTGTTGGTATGATTGAAATGGGTCACGGACTGTGAATAAATATGCCCTTCAGAGAACAACCTTTAAACGTTGAAGGATGACACTGCCTGTTACACACTAACAGGTATACTGTGTTTAAGACTGAAGAAAAGGTTTTTAGTTTTTTCTGGGGAACATTGTAAATAATCTTTTTAATACTTAAAGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009569-'39-37,'39-34,40-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.3=100)
A:
PF0006920=Pkinase=FE(12.5=100)
C2:
PF0006920=Pkinase=PD(9.0=42.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGTGTTTTGTAGTTGGCA
R:
GTAGGTGGTGTAGGGGATGCT
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]