BtaEX6009218 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010736 | BBS5
Description
Bos taurus Bardet-Biedl syndrome 5 (BBS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001101132]
Coordinates
chr2:26802181-26807899:-
Coord C1 exon
chr2:26807837-26807899
Coord A exon
chr2:26806307-26806441
Coord C2 exon
chr2:26802181-26802264
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTCATTATTTCTTCCTGTAGAGT
3' ss Score
8.87
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CGGTCAGTAAAGATTAGAGATTCAAAATTTGGTTTAGCTCTTGTCATAGAAAGCTCTCAGCAG
Seq A exon
AGTGGAGGATATGTTCTTGGCTTTAAAATAGATCCTGTGGAAAAACTACAAGAATCAGTTAAGGAGATCAACTCACTTCACAAAGTCTATTCTGCCAATCCTATATTTGGAGTGGATTATGAGATGGAAGAAAAG
Seq C2 exon
CCGCAGCCCCTTGAAGCTCTGACCGTAAAACAAATTCAAGACGATGTAGAGATCGACTCTGATGATCACACGGATGCTTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010736-'10-12,'10-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(6.0=100)
A:
PF072896=DUF1448=FE(13.1=100)
C2:
PF072896=DUF1448=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCAGTAAAGATTAGAGATTCAAA
R:
CACAAAAGCATCCGTGTGATCA
Band lengths:
147-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]