DreEX6038508 @ danRer10
Exon Skipping
Gene
ENSDARG00000039827 | bbs5
Description
Bardet-Biedl syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1083]
Coordinates
chr9:48589247-48592239:-
Coord C1 exon
chr9:48592177-48592239
Coord A exon
chr9:48590004-48590138
Coord C2 exon
chr9:48589247-48589330
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTATGAACTCTTTCTCTTAGACA
3' ss Score
6.48
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
CGCTCGATAAGGATTAGAGACTCTAAATTTGGACTTGCTCTTGTGATTGAGAGCTCTCAACAG
Seq A exon
ACAGGAGGGTATGTTTTGGGATTCAAGATCGATCCAATGGACAAGTTACAGGATGCAGTGAAGGAAATCAACTCCCTGCACAAAGTTTATTCCGCAAACCCTATATTTGGTGTGGAATATGAGATGGAGGAAAAG
Seq C2 exon
CCTCAGCCCCTGGAGGAGCTGACCGTAGAGCAGCCGCCTGATGACGTGGAGATTGAGCCGGATGAGCACACGGATGCTTTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039827-'8-13,'8-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.750
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(6.0=100)
A:
PF072896=DUF1448=FE(13.1=100)
C2:
PF072896=DUF1448=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCGATAAGGATTAGAGACTCT
R:
AGTAAAAGCATCCGTGTGCTCA
Band lengths:
147-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]