MmuEX6101953 @ mm10
Exon Skipping
Gene
ENSMUSG00000063145 | Bbs5
Description
Bardet-Biedl syndrome 5 (human) [Source:MGI Symbol;Acc:MGI:1919819]
Coordinates
chr2:69661036-69665109:+
Coord C1 exon
chr2:69661036-69661098
Coord A exon
chr2:69663026-69663160
Coord C2 exon
chr2:69665026-69665109
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTCTTATTTTGTTCTTATAGAGT
3' ss Score
8.93
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CGTTCAATAAAGATCAGAGATTCAAAATTTGGTTTGGCGCTTGTCATAGAAAGCTCTCAGCAG
Seq A exon
AGTGGAGGATACGTCCTTGGCTTTAAAATAGACCCTGTGGAAAAACTACAGGAATCAGTTAAAGAGATCAACTCACTTCACAAAGTCTATTCTGCCAGTCCAATATTTGGAGTGAATTATGAAATGGAAGAAAAG
Seq C2 exon
CCACAGCCACTTGAAGCTCTGACTGTTGAACAAATTCAAGATGATGTGGAAATAGACTCTGATGACCACACGGATGCTTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063145_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.142
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(77.8=100),PF072896=DUF1448=PU(1.4=4.5)
A:
PF072896=DUF1448=FE(13.1=100)
C2:
PF072896=DUF1448=PD(14.8=13.8),PF072896=DUF1448=FE(40.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTCAAAATTTGGTTTGGCGC
R:
ACAAAAGCATCCGTGTGGTCA
Band lengths:
130-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types