RnoEX6017307 @ rn6
Exon Skipping
Gene
ENSRNOG00000007127 | Bbs5
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55901998-55906451:+
Coord C1 exon
chr3:55901998-55902060
Coord A exon
chr3:55904566-55904700
Coord C2 exon
chr3:55906368-55906451
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATTTTTTCTTACAGAGT
3' ss Score
10.6
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CGTTCAATAAAGATCAGAGATTCAAAATTTGGCTTGGCTCTTGTCATAGAAAGCTCTCAGCAG
Seq A exon
AGTGGAGGATATGTTCTTGGCTTTAAAATAGACCCAGTGGAAAAACTACAGGAATCAGTTAAGGAGATCAACTCACTTCACAAAGTCTATTCTGCCAGCCCGATATTTGGAGTGAATTATGAAATGGAAGAGAAG
Seq C2 exon
CCACAGCCACTTGAAGCTCTGACTGTTGAACAAATTCAAGATGATGTGGAAATAGACTCTGATGACCACACGGATGCTTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127-'16-16,'16-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(6.0=100)
A:
PF072896=DUF1448=FE(13.1=100)
C2:
PF072896=DUF1448=FE(8.1=100)
Main Skipping Isoform:
ENSRNOT00000009396fB1924
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCAGAGATTCAAAATTTGGCT
R:
CACAAAAGCATCCGTGTGGTC
Band lengths:
138-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]