BtaEX6009252 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:26991599-26994868:+
Coord C1 exon
chr2:26991599-26991718
Coord A exon
chr2:26992340-26992456
Coord C2 exon
chr2:26994491-26994868
Length
117 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCTCTCATTTTCAGTAA
3' ss Score
9.81
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
Exon sequences
Seq C1 exon
ATTATACACAGACATGTTCACCTACTCAGTTTCACTGCCCTGATCACCGATGTATTGCCCTAACTTTTGTCTGTGATGGGACCAAGGACTGTGCTGATGGGTCTGATGAGATTGGTTGTG
Seq A exon
TAATTAACTGCACTGCTTCTCAATTCACATGTGTTAGTAATGGTCAGTGTATTAGCAAGACATATCGTTGTGATGGTGTTTTTGACTGTGATGACCACTCTGATGAGACAGATTGTC
Seq C2 exon
CAACCAGGCCTCCTGGTATGTGCCACCAAGATGAATTCCAGTGCCAAGAAGATGGGATCTGCATTCCGAAGACCTGGGAGTGTGATGGGCATGAGGACTGCCTCCAGGGATCTGATGAGCACAATGGCTGTCCCCCCAAAACCTGCCATCCTTCTCATTTCGTCTGTCAGAATGGAAACTGCATCTATAGAAATTGGCTCTGTGATGGGGACAATGATTGCGGAGACATGAGCGATGAGAAGGACTGCCCTACTCAGCCTTTTCAGTGTCCCAGTTGGCAGTGGCAATGCCCCGGCCATAGCATCTGTGTGAATCTGAGTGCAGTGTGTGATGGTGTCTCTGACTGCCCCGGTGGGACAGATGAGTCCCCACTTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.2)
A:
PF0005713=Ldl_recept_a=WD(100=95.0)
C2:
PF0005713=Ldl_recept_a=WD(100=30.7),PF0005713=Ldl_recept_a=WD(100=29.1),PF0005713=Ldl_recept_a=PU(88.6=30.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACTGTGCTGATGGGTC
R:
CATTGTCCCCATCACAGAGCC
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]