GgaEX0016206 @ galGal4
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18280874-18282538:+
Coord C1 exon
chr7:18280874-18280993
Coord A exon
chr7:18281361-18281477
Coord C2 exon
chr7:18282161-18282538
Length
117 bp
Sequences
Splice sites
3' ss Seq
TAACTTTTTTCTTTTTTTAGTAT
3' ss Score
9.06
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
CTTTCACAGGTACTTGTGAACCCAGGCAATTTCAGTGTCCTGACCATCGCTGTATTGACCCATACTATGTCTGTGATGGGGACAAAGACTGTGTAGATGGGGCTGATGAGCATGACTGCA
Seq A exon
TATACAATTGCAGTGGCACAGAGTTTAAATGTGTAAGTGGAGACCAGTGTATCAGTTCTTACTACCAATGTGACGGTGTTTTTGACTGTAATGATCACTCAGATGAGACGGATTGCC
Seq C2 exon
CTACAAGACCACCAGGAATGTGCCACCAGAATGAATTCCAATGCCAATCAGATGGCAACTGTATTCCTGCTAACTGGGAATGTGATGGCCATCTTGACTGTGCAGATGGCTCAGATGAACATCACAGATGTCCTGCCAGGACCTGTCCGCCATCCCTTTTCCGCTGTGACAATGGCAACTGTGTCTACCGAGCATGGATATGTGATGGTGATAATGACTGCAGGGATATGAGTGATGAGAGAGATTGCCCCACGCAACCCTTCCGGTGTCCCAGCTGGCAGTGGCAATGTCCAGGCCATAGTATCTGTGTGAATCTGAGCAAAGTTTGTGATAATTCTGCTGATTGCCCTAATGGAGCAGATGAATCCCCACTGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.2)
A:
PF0005713=Ldl_recept_a=WD(100=95.0)
C2:
PF0005713=Ldl_recept_a=WD(100=30.7),PF0005713=Ldl_recept_a=WD(100=29.1),PF0005713=Ldl_recept_a=PU(88.6=30.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTACTTGTGAACCCAGGC
R:
TCCTGGCAGGACATCTGTGAT
Band lengths:
255-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]