DreEX6038558 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48825452-48829684:+
Coord C1 exon
chr9:48825452-48825571
Coord A exon
chr9:48827252-48827368
Coord C2 exon
chr9:48829292-48829684
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTGTTCTTCTCCTCGCCAGTGT
3' ss Score
7.42
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
Exon sequences
Seq C1 exon
ATTCGATTGGCACGTGTTACCCTGGTCAGTTCCAGTGTCCAGACCATCGCTGCATCGACCCTAATTATGTGTGTGATGGAGACAGAGATTGTGCTGATGGTGCAGATGAACAAGGCTGTG
Seq A exon
TGTACAACTGCACAGCCTATGAGTTTAAGTGTGCAAACGGCCATCAGTGTGTGAACTCGTACTACAGATGTGACGGCGTTTTTGACTGCAATGACCGCTCTGATGAATCTGGTTGTC
Seq C2 exon
CCACTAGGCCTCCGGGCATGTGCCACCATGAGAGTGAGTTTCAGTGCCAGTCAGATGGCAGCTGTGTGCCAGTGAATTGGGAATGTGACGGTCATCCGGACTGTGAGGACGGTTCAGACGAGCATCACGCGTGTCCACCGCGCACCTGTCCCACCACGCAGTTCCGCTGCGACAACGGCAACTGTGTTTACCGTGGCTGGATCTGCGATGGAGATAACGACTGTCGGGATGGGAGCGACGAGCGGGACTGTCCCACACCACCGTTTCGCTGTCCCAGCTGGCAGTGGCAGTGTCCCGGGCATAGCGTGTGTGTGAACCTCAGCAGGGTGTGTGACAACACTCCAGATTGTCCCAACGGAGCCGACGAGTCCCCGCTTTGCAGTAAGTCCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'22-29,'22-28,23-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.2)
A:
PF0005713=Ldl_recept_a=WD(100=95.0)
C2:
PF0005713=Ldl_recept_a=WD(100=30.3),PF0005713=Ldl_recept_a=WD(100=28.0),PF0005713=Ldl_recept_a=WD(100=28.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCAGATGAACAAGGCTG
R:
CTCCCATCCCGACAGTCGTTA
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]