RnoEX0050695 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55742724-55744474:-
Coord C1 exon
chr3:55744355-55744474
Coord A exon
chr3:55744153-55744269
Coord C2 exon
chr3:55742724-55743101
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCCCTCATTTTCAGTGT
3' ss Score
11.2
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
AAGCTTCAGGGACCTGCCAGCCTACACAGTTTCGGTGCCCTGACCACCGATGCATCAGCCCGCTGTATGTCTGTGATGGGGACAAGGACTGCGCGGATGGGTCTGATGAGGCGGGCTGTG
Seq A exon
TGTTAAACTGTACGAGTGCCCAGTTCAAATGTGCCGATGGGAGTTCTTGCATTAACAGCAGGTACCGCTGCGATGGGGTTTACGACTGCAGGGACAACTCTGACGAGGCAGGCTGCC
Seq C2 exon
CCACCAGGCCTCCCGGCATGTGCCACCTGGATGAGTTCCAGTGCCAAGGAGACGGTACATGCATCCCTAACACCTGGGAGTGTGACGGGCATCCAGACTGTATCCACGGGTCCGACGAGCACACTGGCTGTGTTCCTAAGACCTGCTCGCCGACTCATTTCCTCTGTGACAATGGAAACTGCATCTACAAAGCGTGGATCTGTGATGGGGACAATGATTGTAGGGATATGAGTGATGAGAAGGACTGTCCTACCCAGCCTTTTCACTGTCCTAGCACGCAGTGGCAGTGCCCGGGCTACAGCACCTGTATCAATCTGAGTGCCCTGTGTGACGGCGTCTTTGACTGTCCGAATGGGACTGACGAGTCCCCACTTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184-'32-37,'32-36,33-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.2)
A:
PF0005713=Ldl_recept_a=WD(100=95.0)
C2:
PF0005713=Ldl_recept_a=WD(100=30.7),PF0005713=Ldl_recept_a=WD(100=29.1),PF0005713=Ldl_recept_a=PU(88.4=29.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACAGTTTCGGTGCCCTG
R:
GCGAGCAGGTCTTAGGAACAC
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]