BtaEX6009259 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:26974489-26985303:+
Coord C1 exon
chr2:26974489-26974692
Coord A exon
chr2:26983497-26983689
Coord C2 exon
chr2:26985178-26985303
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTCCATATTTTAATTTACAGGAA
3' ss Score
8.62
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTGCTGAGCGGTTTCTGCTCTTTTCATCTAATCTGGCTGTTCGTGGCATCCCACTCACCCTCTCTCACCAGACGGAGGTCATCCTTCCAGTGACAGGATCTTCTTCCATCTTCCTTGGGATCGATTTTGATGCCCGCGAGAAGGCTATCTTTTTTTCAGATACAAAGAAAAACATTATTTATAGACAAAAGCTCGATGGTACAG
Seq A exon
GAAGAGAAATTATCACAGCTAACAGGGTGCCAGCTGTTCAAAGTTTGAGTTTTGATTGGATTTCGAGGAATCTCTATTGGACAGATTCTTCTTATAGGAGTGTCAGTGTCATAAGGCTAGGTGATAAATCAAGACGTACAATCATCCAGAATTTAAATAACCCACAGTCAATCGTAGTTCATCCGACTGCTGG
Seq C2 exon
GTATATATTCTTCTCGGTTTGGTACCGTCCTGCTAAAATCCTGAGAGCATGGGCTGATGGATCTAACATTTTACCTATAGTAAACACTACTCTTGGGTGGCCCAGTGGGCTGTCCATTGATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=WD(100=61.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCACCAGACGGAGGTCAT
R:
GGCCACCCAAGAGTAGTGTTT
Band lengths:
245-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]