DreEX6038562 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48802652-48814517:+
Coord C1 exon
chr9:48802652-48802855
Coord A exon
chr9:48807527-48807719
Coord C2 exon
chr9:48814392-48814517
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTTTACTGTATTCGCTACAGGTC
3' ss Score
9.32
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTGTAAGGCAGTTTCTGCTGTTCTCCAGTCAGCTGGCGGTCCGAGGAATCCCCTTCAATCTGTCCACACAGGAGGACATCATTCTGCCCATCACAGGAACGCCGTCTTATTTTGTGGGAGTGGACTTCAGTGCTGAGGATAATTCAATATTCTTCTCTGATACAGTAAAAGACATCATCTACAAACAGAAAGTTGATGGAACTG
Seq A exon
GTCGAGAGGTTTTGGCAGCCAATCGGGTGGACGGAGTGGAAGATCTGGCATATGATTGGATATCGAAGAACTTATACTGGACGGATCCACGTTACAGGAGTATTTCTGTGATGAAGGTGGTGGATAAATCCAGACGAGCCATCGTACGCAACCTTAACAACCCCAGATCCATAGTGGTCCATCCAGTGGCTGG
Seq C2 exon
GTTTATATTCTGGACTGACTGGTATCGTCCTGCGAAGATCATGCGGGCCTGGGGTGATGGTTCACATGCTCAGTCTATAGTGAACACCACTCTCGGCTGGCCCAACGGCCTGGCCATAGACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'15-20,'15-19,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=WD(100=61.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=97.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTCAATCTGTCCACACA
R:
CAGCCGAGAGTGGTGTTCAC
Band lengths:
254-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]