GgaEX0016204 @ galGal4
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18274504-18276406:+
Coord C1 exon
chr7:18274504-18274707
Coord A exon
chr7:18275650-18275842
Coord C2 exon
chr7:18276281-18276406
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTATGTATTGTAAATTCTAGGAA
3' ss Score
7.69
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
CTGTGCAGCAGTTTCTGCTATTTTCATCCCAGCTAGCAGTACGGGGAATCCCATTCAATCTTTCTACCCAAGAAGATGTGATCATACCTGTAACAGGAAGCCCTTCATATTTTGTTGGAATTGACTTCTGGGCTCAAGATGACACCATTTTTTTTTCAGACACAAGTAGAGATATGATCTATAAACAGAAAACTGATGGTTCAG
Seq A exon
GAAGAGAAATTCTGACAGCTAATAGAGTGGAAAGTGTTGAAGACTTGGCCTTTGACTGGATCTCAAAGAATCTGTACTGGACAGACCCTCGATACAGAAGCATAAGTGTAATGAGACTTGCAGATAAATCTAGAAGAGCTATTGTTCAGAATTTAAATAATCCTCGATCAATAGTGGTTCATCCTGTCATTGG
Seq C2 exon
GTATATATTCTGGACAGATTGGTTCCGTCCTGCTAAAATTATGAGGGCCTGGAGTGATGGATCACATGGCTTACCAATTGTGAATACAACTCTAGGCTGGCCTAACGGCTTAGCCATTGACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=WD(100=61.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=97.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCCAGCTAGCAGTACGG
R:
GATCCATCACTCCAGGCCCTC
Band lengths:
244-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]