RnoEX6017261 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55751150-55756092:-
Coord C1 exon
chr3:55755889-55756092
Coord A exon
chr3:55754086-55754278
Coord C2 exon
chr3:55751150-55751275
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTATATTCTTTTACCTCTAGGAA
3' ss Score
10.25
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CCGTTAAGAACTTCCTGCTCTTCTCATCGAAAACGGCTGTGCGTGGAATCCCATTCACCCTCTCCACCCAGGAAGATGTCATGGTTCCTGTCACAGGGAGTCCATCCTTCTTCGTTGGAATTGATTTTGATGCCCAACACAGTACTGTCTTCTATTCAGATTTGTCAAAAGACATAATTTATAAACAAAAAATTGATGGCACAG
Seq A exon
GAAAAGAGGTTATCACAGCAAACCGGTTGGAAAGTGTTGAGTGTTTGACTTTTGACTGGATCTCAAGGAATCTTTACTGGACAGATGGAGGACTAAAGAGTGTCACTGTCCTGAGGCTGGCTGATAAGTCCCGACGACAGATAATCAGCAACTTAAACAACCCTCGTTCCATTGTGGTGCATCCGACCGCTGG
Seq C2 exon
GTATATGTTCCTGAGTGATTGGTTCCGTCCTGCAAAAATTATGAGAGCATGGAGCGATGGTTCTCACCTAATGCCCATAGTCAATACTAGTCTGGGGTGGCCCAATGGCTTGGCCATCGATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184-'23-28,'23-26,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=WD(100=61.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=97.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATCGAAAACGGCTGTGC
R:
GGTGAGAACCATCGCTCCATG
Band lengths:
251-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]