BtaEX6009267 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:26955832-26963234:+
Coord C1 exon
chr2:26955832-26955984
Coord A exon
chr2:26957437-26957556
Coord C2 exon
chr2:26963106-26963234
Length
120 bp
Sequences
Splice sites
3' ss Seq
AAGTCTTTTTCTCTGTTTAGATG
3' ss Score
7.58
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
AAAGCAAAATTAATCGTACCTTTGAATGTTACCCAAATGAATGGGCCTGTCCAAAGTCTGGAAAATGCATCCCAATTTCTAAAGTTTGTGATGGGACTTTAGATTGTCCAGGAGGAGAAGACGAAAGCAATATCACTGCAGGACAACAGTGTG
Seq A exon
ATGTGAATCTGTGTCCGTCCTTGGGATGTGAATACCAATGCCACAGGTCACCAGGTGGAGGGATGTGTTACTGCCCCTCAGGTTTTATTGTCAACCAAAATAGAACCAATAACTGCGTCG
Seq C2 exon
ATTTTGACGATTGCCAGATATGGGGAGTTTGTGACCAGCTATGTGAAGACCGAATTGGCCATCACCGGTGTAACTGTGTAGAGGGGTATGTCTTGGAGCGCCAGAAGCACTGCAGAGCTAATTCTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=84.6)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAATGAATGGGCCTGTCCA
R:
TTAGCTCTGCAGTGCTTCTGG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]