RnoEX6017255 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55764890-55772087:-
Coord C1 exon
chr3:55771938-55772087
Coord A exon
chr3:55770595-55770714
Coord C2 exon
chr3:55764890-55765018
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTTGCCTTCTCTGTTTAGGTA
3' ss Score
11.5
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAAGTAACCAGAGTCATCATAGGTGTTACCCAAGAGAATGGGCGTGTCCTGGGTCTGGACGATGCATCTCAATTGATAAAGTTTGCGATGGAGTTCCTGACTGTCCAGAAGGAGACGATGAGAACAACGTCACAAGCGGAAGAACCTGTG
Seq A exon
GTATGGGTGTCTGCTCTGTCTTAAACTGTGAGTACCAGTGCCATCAGACGCCATTTGGAGGAGAATGCTTCTGCCCCCCAGGTCATATTATCAACAGCAATGACAGCCGTACTTGCATTG
Seq C2 exon
ATTTCGACGACTGCCAGATATGGGGAATTTGTGACCAGAAGTGTGAAAACCGACAGGGCCGTCATCAGTGCCTCTGTGAAGAAGGGTATATCCTGGAGCGAGGGCAGCATTGCAAATCCAGTGACTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184-'15-16,'15-13,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=86.3)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=86.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGAATGGGCGTGTCCTG
R:
GGAGTCACTGGATTTGCAATGC
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]