GgaEX0016218 @ galGal3
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
NA
Coordinates
chr7:20228142-20231028:+
Coord C1 exon
chr7:20228142-20228285
Coord A exon
chr7:20229407-20229526
Coord C2 exon
chr7:20230900-20231028
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTATTTCATTTCCTTTTTAGACA
3' ss Score
9.03
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAAGTAGTTATCATGAATGCTACCCGGGAGAGTGGGCCTGCCCTGAGTCAGGGCATTGTATTCCAATTGGGAAAGTGTGCGATGGAGCTGCAGACTGCCCTGCAGGAGAAGATGAAACGAACATCACGGCAGGCAGACATTGCA
Seq A exon
ACATATCACACTGTGCTGCTCTGAGCTGCCAGTATCGCTGTCATTCTTCTCCTTCAGGAGGGATGTGTTATTGCCCTTCGGGATATACAATAAGTAGCAATGACAGTCGTACTTGTATTG
Seq C2 exon
ATTTTGATGACTGCAAAATGTGGGGTGTCTGTGACCAGCTGTGTGAAGATCGTGTGGGACATCACCAGTGCCACTGTGTGGAAGGTTATTTCCTAGAGCATCATCGACACTGTAGAGCCAACACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=89.8)
A:
PF126622=cEGF=PU(90.6=70.7)
C2:
PF126622=cEGF=PD(6.2=4.5),PF146701=FXa_inhibition=WD(100=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATGCTACCCGGGAGAGT
R:
GTGTTGGCTCTACAGTGTCGA
Band lengths:
256-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]