DreEX6038569 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48775456-48778406:+
Coord C1 exon
chr9:48775456-48775599
Coord A exon
chr9:48777475-48777594
Coord C2 exon
chr9:48778278-48778406
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGTGTTTTGTGTCAGGTA
3' ss Score
10.22
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
Exon sequences
Seq C1 exon
ATAATGTCCAGCGGGAGTGTTATCCAGGCGAATGGCCGTGTCCTTCTTCTGGTGTCTGCATCCCTTTTGACCACCTCTGTGACGGGACAGTTCACTGTCCTGATGGAGAAGATGAGACCAACATCACCGCCGGACGCAACTGCA
Seq A exon
GTATCTGGCGCTGTGCTTCGCTGAGCTGTGAACATCACTGTCACGCGTCTCCGGATGGAGGAACCTGTGCTTGTCCACCTGGATATGTGATCAACACAAACGACAGCCGCTCCTGCATGG
Seq C2 exon
ATTATGATGACTGCAGTCTGTGGGGAATGTGTGATCAGCTGTGTGAGGATCGCATCGGGAGTCATCGCTGCAGCTGTCGGGACGGCTACATTCTGGAGCAGCACAGATACTGCAGAGCAAATCCCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=89.8)
A:
PF146701=FXa_inhibition=WD(100=85.4)
C2:
PF146701=FXa_inhibition=WD(100=77.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTATCCAGGCGAATGGC
R:
TGCTCTGCAGTATCTGTGCTG
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]