BtaEX6009297 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004241 | G6PC2
Description
Bos taurus glucose-6-phosphatase, catalytic, 2 (G6PC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192046]
Coordinates
chr2:27274585-27278271:-
Coord C1 exon
chr2:27278160-27278271
Coord A exon
chr2:27276050-27276165
Coord C2 exon
chr2:27274585-27275096
Length
116 bp
Sequences
Splice sites
3' ss Seq
TCTCTATTTTTCCATCGTAGACT
3' ss Score
9.85
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
GAAGTCCATCTGGCCATGCGATGGGTTCATCATGTGTCTGGTATGTCATGGTGACAGCGGCCCTGAGCCACACCGTCAGTCAGATGGATAAGTCTTTTATCACTCTGCACAG
Seq A exon
ACTGACTTGGTCATTTCTTTGGAGTCTCTTTTGGTTGATTCAAATCAATGTCTGCATCTCCAGAGTATTCATAGCAACACATTTTCCTCATCAAGTTATTCTTGGAGTAATTGGTG
Seq C2 exon
GCGTCCTGGTAGCGGAGATCTTTGAATACACTCCAGGTATCCAAACAGCCAGCCTGAGTGTATACCTGAAGACCAACCTGTTCCTCTTCCTGTTTGCACTTGGCTTTTACCTGCTGCTCAGACATCTTGACATTGACCTGCTGTGGTCCGTGCCCATAGCCAAGAAGTGGTGCGCCAACCCCGACTGGATCCACATTGACACCACACCTTTTGCCGGACTTGTGAGAAACCTCGGGGTCCTCTTTGGCCTGGGCTTTGCAATTAACTCAGAGATGTTCCTCAGGAGCTGTCGAGGAGAAAACGGCTACGGGCTGAGCTTCCGGCTGCTCTGTGCCCTGGTCTCGCTGACCACTCTGCAGCTCTACCACTTCATCAAGATCCCCACTGACACCGAGTATTTGTTTTACGTGCTGTCTTTCTGTAAAAGTGCGTCCATCCCACTGACTGTGGTTGCCCTGATTCCCTACTGTATTCATATGTTAATGAAACCAAGTGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004241-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(23.9=100)
A:
PF0156916=PAP2=FE(25.2=100)
C2:
PF0156916=PAP2=PD(9.7=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACACCGTCAGTCAGATG
R:
GTCAATGTGGATCCAGTCGGG
Band lengths:
246-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]