MmuEX6101847 @ mm9
Exon Skipping
Gene
ENSMUSG00000005232 | G6pc2
Description
glucose-6-phosphatase, catalytic, 2 [Source:MGI Symbol;Acc:MGI:1277193]
Coordinates
chr2:69060989-69064741:+
Coord C1 exon
chr2:69060989-69061100
Coord A exon
chr2:69063869-69063984
Coord C2 exon
chr2:69064625-69064741
Length
116 bp
Sequences
Splice sites
3' ss Seq
TATCCATTCTTCCATCACAGACT
3' ss Score
8.81
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
GAAGTCCATCTGGCCACGCAATGGGCTCATCGTGCGTCTGGTATGTCATGGTAACAGCTGCCCTAAGCTACACCATCAGCCGGATGGAGGAGTCCTCTGTCACTCTGCACAG
Seq A exon
ACTGACCTGGTCCTTTCTGTGGAGTGTTTTCTGGTTGATTCAAATCAGCGTCTGCATCTCAAGAGTATTCATAGCCACACATTTCCCCCATCAGGTCATTCTTGGAGTGATTGGTG
Seq C2 exon
GGATGCTAGTAGCCGAGGCCTTTGAACACACTCCAGGAGTCCACATGGCCAGCTTGAGTGTGTACCTGAAGACCAACGTCTTCCTCTTCCTGTTTGCCCTCGGCTTTTACCTGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005232-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(23.3=100),PF134911=DUF4117=PU(26.7=92.1)
A:
PF0156916=PAP2=FE(24.5=100),PF134911=DUF4117=FE(29.8=100)
C2:
PF0156916=PAP2=PD(8.8=8.2),PF134911=DUF4117=PD(42.7=32.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCCATCTGGCCACGCAAT
R:
GAAGCAGGTAAAAGCCGAGGG
Band lengths:
228-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: