GgaEX6042471 @ galGal3
Exon Skipping
Gene
ENSGALG00000010899 | G6PC2
Description
NA
Coordinates
chr7:20384322-20387108:-
Coord C1 exon
chr7:20386997-20387108
Coord A exon
chr7:20386032-20386147
Coord C2 exon
chr7:20384322-20384833
Length
116 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTTTTTCCTTTTAGACT
3' ss Score
11.07
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GGAGTCCATCTGGACATGCCATGGGATCTTCCTGCGTCTGGTATGTAATGGTAACAGCAGCACTTAGCTACACTGTGAGGTGGAAAGAGAAATCAGCAGTTACCCTTCACAG
Seq A exon
ACTGACATGGTCATTACTCTGGACTATTTTTTGGATTATCCAGATCAGTGTGTGCATCTCAAGAGTATTCATAGCAACACATTTCCCTCATCAAGTTATTCTTGGAGTATTTGCTG
Seq C2 exon
GAATTGTTGTGGCAGAAGCATTTGAGCATACCCCTGCTATTCAGACAGCAAGCTTGAGAATGTACATCAAGACAAACTTGTTTCTTTTCATCTTTGCCCTTGGTTTTTACCTAGTCCTGAAGCTTCTTGATATTGACTTGCTGTGGTCTGTTCCAAAGGCCAAGAAGTGGTGTGCGAATCCAGACTGGATAAACATTGACACAACTCCATTTGCTGGACTGGTGAGAAATTTAGGTGCATTCTTTGGCTTAGGTATTGGTATTAATTCTGAAATGTTCATCACCAGCTGCAAAGGTAAAAACAGCTGTAAGCTAAGTTTCCGCGTACTGTGTATAGCTGCTTCGTTAGCTACACTACAGCTGTATAATTTTGTTAAGATACCTACTCATACTGAGTATTTGTTCTACATTCTCTCTTTTTGTAAGAGTGCAGCTATGCCTCTGACTGTAGTCGCCTTGGTTCCATACTGTGTCCACACGTTAATGAGGACAACTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010899-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(24.8=100)
A:
PF0156916=PAP2=FE(26.2=100)
C2:
PF0156916=PAP2=PD(10.1=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGATCTTCCTGCGTCTG
R:
TTGGCCTTTGGAACAGACCAC
Band lengths:
256-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]