HsaEX6016488 @ hg19
Exon Skipping
Gene
ENSG00000152254 | G6PC2
Description
glucose-6-phosphatase, catalytic, 2 [Source:HGNC Symbol;Acc:28906]
Coordinates
chr2:169761015-169764643:+
Coord C1 exon
chr2:169761015-169761126
Coord A exon
chr2:169763174-169763289
Coord C2 exon
chr2:169764078-169764643
Length
116 bp
Sequences
Splice sites
3' ss Seq
TATCTATTCTTCCATCGTAGACT
3' ss Score
8.88
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
GAAGTCCATCTGGCCATGCAATGGGCGCATCCTGTGTCTGGTATGTCATGGTAACCGCTGCCCTGAGCCACACTGTCTGTGGGATGGATAAGTTCTCTATCACTCTGCACAG
Seq A exon
ACTGACCTGGTCATTTCTTTGGAGTGTTTTTTGGTTGATTCAAATCAGTGTCTGCATCTCCAGAGTATTCATAGCAACACATTTTCCTCATCAAGTTATTCTTGGAGTAATTGGTG
Seq C2 exon
GCATGCTGGTGGCAGAGGCCTTTGAACACACTCCAGGCATCCAAACGGCCAGTCTGGGCACATACCTGAAGACCAACCTCTTTCTCTTCCTGTTTGCAGTTGGCTTTTACCTGCTTCTTAGGGTGCTCAACATTGACCTGCTGTGGTCCGTGCCCATAGCCAAAAAGTGGTGTGCTAACCCCGACTGGATCCACATTGACACCACGCCTTTTGCTGGACTCGTGAGAAACCTTGGGGTCCTCTTTGGCTTGGGCTTTGCAATCAACTCAGAGATGTTCCTCCTGAGCTGCCGAGGGGGAAATAACTACACACTGAGCTTCCGGTTGCTCTGTGCCTTGACCTCATTGACAATACTGCAGCTCTACCATTTCCTCCAGATCCCGACTCACGAAGAGCATTTATTTTATGTGCTGTCTTTTTGTAAAAGTGCATCCATTCCCCTAACTGTGGTTGCTTTCATTCCCTACTCTGTTCATATGTTAATGAAACAAAGCGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152254-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PD(24.7=63.2)
A:
PF0156916=PAP2=FE(26.5=100)
C2:
PF0156916=PAP2=PD(8.8=7.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCATCTGGCCATGCAATG
R:
ACCACAGCAGGTCAATGTTGA
Band lengths:
257-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)